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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g37790.1.p | ||||||||
Common Name | BRADI_2g37790, LOC100845584 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 373aa MW: 42560.2 Da PI: 8.4269 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.1 | 1.7e-06 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg +F+ + +Lk+H+++H Bradi2g37790.1.p 77 HDCEECGARFKKPAHLKQHMQSH 99 56*******************99 PP | |||||||
2 | zf-C2H2 | 19.6 | 2.5e-06 | 105 | 129 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C+ C+ s+srk++L+rH+ tH Bradi2g37790.1.p 105 FACHvdGCPFSYSRKDHLNRHLLTH 129 78*********************99 PP | |||||||
3 | zf-C2H2 | 18.1 | 7.4e-06 | 134 | 159 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C++ Fs++ n++rH + H Bradi2g37790.1.p 134 FICPmeGCNRKFSTRGNMQRHVQEmH 159 78*******************99877 PP | |||||||
4 | zf-C2H2 | 18.5 | 5.4e-06 | 171 | 195 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp +Cgk F+ s L++H +H Bradi2g37790.1.p 171 FICPevNCGKAFKFASKLQKHEDSH 195 78*******************9888 PP | |||||||
5 | zf-C2H2 | 16.9 | 1.7e-05 | 262 | 286 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC+ sFs ksnL +Hi+ H Bradi2g37790.1.p 262 KCHfeDCKCSFSKKSNLDKHIKAvH 286 7********************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 12 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.4E-6 | 74 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0026 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.607 | 77 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.52E-12 | 89 | 131 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-14 | 97 | 131 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.307 | 105 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0018 | 105 | 129 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 107 | 129 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.42E-7 | 115 | 165 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-7 | 132 | 160 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 1.9E-5 | 134 | 159 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.053 | 134 | 164 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 136 | 159 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.0E-6 | 167 | 195 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.032 | 171 | 200 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.041 | 171 | 195 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 173 | 195 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.5 | 203 | 228 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 205 | 228 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 13 | 231 | 252 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.41E-8 | 242 | 303 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-6 | 242 | 283 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.098 | 261 | 286 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.863 | 261 | 291 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 263 | 286 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 285 | 314 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.3 | 292 | 318 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.954 | 292 | 318 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 294 | 318 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MGERDFDGGD AGARETEPEA AAPVRDIRRY KCEFCDVVRS KKQLIRAHVL EHHKDEVDDL 60 EEYNEAAGGV QRKEITHDCE ECGARFKKPA HLKQHMQSHS SERPFACHVD GCPFSYSRKD 120 HLNRHLLTHQ GKLFICPMEG CNRKFSTRGN MQRHVQEMHK DGSPCESKKE FICPEVNCGK 180 AFKFASKLQK HEDSHAKLEY TEVICCEPGC MKTFTNVECL KAHNQSCHRY VQCDVCDTKQ 240 LKKNFKRHQR MHEGSRVAET VKCHFEDCKC SFSKKSNLDK HIKAVHEQSR PYACGFAGCG 300 KKFSYKHVRD NHEKSSAHVY FEGDFVESGP HPGGRKRKPI PVDTFTRKRV AAPGDVPTYA 360 DGTGYLRWLL SG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 1e-18 | 65 | 225 | 3 | 157 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 1e-18 | 65 | 225 | 3 | 157 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566649.1 | 0.0 | PREDICTED: zinc finger protein 43-like isoform X1 | ||||
Swissprot | Q84MZ4 | 1e-115 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | I1HMH6 | 0.0 | I1HMH6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G37790.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2382 | 38 | 82 | Representative plant | OGRP2981 | 16 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-116 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g37790.1.p |
Entrez Gene | 100845584 |